Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0434
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    64   6e-12
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.1  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   3.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   3.4  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   4.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   7.9  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    24   7.9  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 64.1 bits (149), Expect = 6e-12
 Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = +2

Query: 44  LKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASY 214
           L +  GL  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y
Sbjct: 6   LTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATY 63


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 62   LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 220
            L+ +  YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 62  LNDLNQYLAEKSYVSGYTPSQADVQVF 142
           L+ +++YL   ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 200 DYTIVVRGEG*RPAPCQLAQILEHQLE 120
           +Y +VV G G  P  C +   L  QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 235 SFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 140
           S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 399 SATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 215  CMKQFDYTIVVRGEG*RPAPCQLAQILE 132
            C+K  DY    R +G   +P  + Q+LE
Sbjct: 2711 CLKALDYIFERRPKGQEQSPGNIIQLLE 2738


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 155 KAPAANLPHVLRWYNQI 205
           K P A +PHV +W+  I
Sbjct: 770 KQPVAFIPHVAQWFQGI 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,891
Number of Sequences: 5004
Number of extensions: 20458
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)