Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0434
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    55   1e-08
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    54   3e-08
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    47   4e-06
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    36   0.007
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     30   0.44 
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337...    27   5.5  
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937...    27   5.5  
01_06_0241 - 27813076-27813622,27813695-27814125                       26   7.2  

>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 25/56 (44%), Positives = 35/56 (62%)
 Frame = +2

Query: 44  LKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 211
           L TA GL  L Q+L+ K+YVSG   S+ D++VF  V   P A  P+  RWY+ +A+
Sbjct: 8   LHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 23/51 (45%), Positives = 35/51 (68%)
 Frame = +2

Query: 59  GLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 211
           GL  L++YL  +SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I++
Sbjct: 32  GLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISA 82


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +2

Query: 59  GLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 205
           GL  L++YL  +SY+SGY  S  D+ V+     AP+++  +V RW+  I
Sbjct: 13  GLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
 Frame = +2

Query: 62  LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 205
           L +LNQ L++KS +  +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 76  LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +2

Query: 53  AQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQV---GKAPAANL----PHVLRWYNQIAS 211
           AQ L+  + +LA   Y++G   S AD      +    K P A L    PHV  W++ I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204

Query: 212 YTPAERKT 235
             PA +KT
Sbjct: 205 -RPAWKKT 211


>12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,
            3377337-3377379,3378304-3380332
          Length = 1022

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 74   NQYLAE-KSYVSGYTPSQADVQVFEQVGKAP 163
            +Q+  E K  + GYTPS  DV  FE+ G  P
Sbjct: 928  SQHFRELKELILGYTPSSCDVYEFEE-GSMP 957


>01_01_1176 -
           9372879-9373097,9373814-9374278,9374372-9375447,
           9375534-9375687,9375783-9375879,9376238-9376374
          Length = 715

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +2

Query: 71  LNQYLAEKSYVSGYTPSQADVQVFEQVGKA--------PAANLPHVLRWYNQIASYT 217
           L+ YLA ++++  Y  S AD+ V+  +            +    +++RW+N IA Y+
Sbjct: 102 LDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFNSIADYS 158


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 56  QGLNDLNQYLAEKSYVSGYTPSQAD 130
           QG N +N+YL++ + ++ Y P + D
Sbjct: 216 QGNNSVNEYLSQFNKLARYAPEEVD 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,278,733
Number of Sequences: 37544
Number of extensions: 146987
Number of successful extensions: 318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)