Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0434
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   1e-15
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-08
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   1.4  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      26   7.5  
SB_2697| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.5  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        26   9.9  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 34/57 (59%), Positives = 41/57 (71%)
 Frame = +2

Query: 44  LKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 214
           LK+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 6   LKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 62


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 110 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 214
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 62  LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 157
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 203 FDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQ 105
           F  T+ +  EG     CQ+  IL H+++ EC++
Sbjct: 580 FQRTMSMTLEGLEGVVCQMDDILIHEVQDECVR 612


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 1    KSCYTKKKLWAVGDVKNRPGSQ 66
            +S   + +LWA G+ ++RPG +
Sbjct: 1328 RSALARVRLWAAGEPRSRPGEE 1349


>SB_2697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 101 VSGYTPSQADVQVF----EQVGKAPAANLPHVLRWYNQIASYTPAERKTWSS 244
           V  Y P+  +V+ F    +  GK     +   LR++N + S++PA R  W +
Sbjct: 15  VGFYFPNVFNVRCFSHTIDNAGKHFEFTVLETLRYWNTMFSHSPAARLAWKT 66


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 38  ETLKTAQG-LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 214
           E LK  Q  L D+N+   E     G TP+Q  V + E++ K+        L   N++  +
Sbjct: 188 ENLKAKQAILEDINRENQELKSHKGSTPNQDYVSMIEEL-KSNLEIKKAALEDLNRMNEH 246

Query: 215 TPAERKTWSSGH 250
             AE K   + H
Sbjct: 247 LDAENKQLKARH 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,175,090
Number of Sequences: 59808
Number of extensions: 157502
Number of successful extensions: 293
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)