Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0434
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   5.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 341 TRTK*INVVVIVVFRCW 291
           T T+ ++ VVI  F CW
Sbjct: 257 TITRMLSAVVITFFICW 273


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 89  EKSYVSGYTPSQ 124
           E SY++G TPS+
Sbjct: 285 ENSYLAGLTPSE 296


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 332 K*INVVVIVVFRCW 291
           K ++ VVI+ F CW
Sbjct: 270 KMLSAVVILFFICW 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,104
Number of Sequences: 438
Number of extensions: 1873
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)