Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0434
         (352 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF...    50   3e-07
At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id...    49   1e-06
At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1 (e...    48   1e-06
At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2 (e...    45   1e-05
At2g40660.1 68415.m05017 tRNA-binding region domain-containing p...    35   0.018
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    30   0.50 
At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot...    28   1.5  
At2g36190.1 68415.m04442 beta-fructosidase, putative / beta-fruc...    27   2.7  
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d...    26   8.1  

>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
           EF-1-beta, putative nearly identical to eEF-1beta
           [Arabidopsis thaliana] GI:398606
          Length = 231

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +2

Query: 44  LKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 205
           L +  GL  L+++L  +SY++GY  S+ D+ VF  + K P +   +V RW+N I
Sbjct: 7   LNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHI 60


>At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta
           identical to SP|P48006 Elongation factor 1-beta
           (EF-1-beta) {Arabidopsis thaliana}
          Length = 231

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +2

Query: 44  LKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 205
           L +  GL  L+++L  +SY++GY  S+ D+ VF  + K P +   +  RWYN I
Sbjct: 7   LNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHI 60


>At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1
           (eEF1Balpha1) identical to elongation factor 1B
           alpha-subunit [Arabidopsis thaliana] GI:6686819
          Length = 228

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 35/57 (61%)
 Frame = +2

Query: 44  LKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 214
           L T +GL  L ++LA K+Y+SG   S  DV+V+  V + P    P+  +WY+ +AS+
Sbjct: 8   LHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASH 64


>At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2
           (eEF1Balpha2) identical to elongation factor 1B
           alpha-subunit [Arabidopsis thaliana] GI:6686821
          Length = 224

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 33/56 (58%)
 Frame = +2

Query: 44  LKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 211
           L T +G+  + ++LA K+Y+SG   S  DV+V+  V   P+   P+  +WY  +AS
Sbjct: 8   LHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVAS 63


>At2g40660.1 68415.m05017 tRNA-binding region domain-containing
           protein similar to SP|Q12904 Multisynthetase complex
           auxiliary component p43 [Contains: Endothelial-monocyte
           activating polypeptide II (EMAP-II) (Small inducible
           cytokine subfamily E member 1)] {Homo sapiens}; contains
           Pfam profile PF01588: Putative tRNA binding domain
          Length = 389

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
 Frame = +2

Query: 62  LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 205
           L  LN  LA KS +  +G TPS ADV VF  +         +    +PHV+RW N I
Sbjct: 76  LEKLNLELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSDKEKVPHVIRWVNYI 132


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 77  QYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLR--WYNQIASYTPAERK 232
           + L  K  + G T ++   +++E  G    +N P V +  WYNQ+ S  P +R+
Sbjct: 233 ELLNGKPILPGKTENEQLNKIYELCGSPDESNWPGVSKMPWYNQMKSSRPLKRR 286


>At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein
           / VPS11 family protein similar to Vacuolar protein
           sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo
           sapiens]; similar to Vacuolar biogenesis protein END1
           (PEP5 protein) (Vacuolar protein sorting 11)
           (Swiss-Prot:P12868) [Saccharomyces cerevisiae]
          Length = 932

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +2

Query: 62  LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGK 157
           L DL  Y     YVS   PSQA V + EQ GK
Sbjct: 495 LEDLGNYDEALQYVSSLEPSQAGVTI-EQYGK 525


>At2g36190.1 68415.m04442 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:18324 from [Daucus carota]
          Length = 591

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 62  LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANL 175
           +N+ +  + ++  V G TP+QADV+V   VG    A +
Sbjct: 386 MNNHDIKMGQRIEVKGITPAQADVEVTFYVGSLEKAEI 423


>At2g35340.1 68415.m04333 RNA helicase, putative similar to
           ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1110

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 59  GLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAE 226
           G NDLN ++++K  V       A VQ    +GK+  + L   +  Y+   S +P E
Sbjct: 2   GSNDLNTWVSDKLMVLLGFSQTAVVQYLIAMGKSWCSVLDQAIFSYDSKQSKSPGE 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,415,630
Number of Sequences: 28952
Number of extensions: 109987
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)