Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0433
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   5.1  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    25   6.7  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    25   8.9  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = -1

Query: 615 ITYDVSSRYI*TAPRGSYIIILSHILKSVGEFIVYLKLDVCKMLNVSNMVFYRTIIERYV 436
           ++ DV  +    A  G   I+     KS    +  L L   K L   + V Y T+ +  V
Sbjct: 313 VSEDVKDQRFLEAINGINSIVTQLKKKSTELNVDLLSLPSVKSLREEHKVLYHTVSQSVV 372

Query: 435 YDFQNFMT 412
             F  F+T
Sbjct: 373 QQFSKFLT 380


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 56  NSCTGGSVLCESAWVGTIXPPYFCCEAIMHFGLMSGAEIALYSHLKVAD 202
           NS  G S L   AW   +    F     M+    +  EIAL+S ++V D
Sbjct: 72  NSVAGNSPLQNEAWAFLMDNEDFFLPVPMNPAQCTALEIALWSLIRVDD 120


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 326 IYILFYNKLYNIYCGNKYTFFISKWTSXWPTWC 228
           I I ++ + +   CG     F+ KW + + T+C
Sbjct: 134 IAIFYFYETWTKACGKGIKHFLKKWRNMFFTFC 166


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 551 YRIFLNLSVSLSFILNWMYAKC*TYQTWFFIVRLSNDTYTIFK 423
           Y++F N + + S  ++W Y +   YQT  + + +S  +Y++ K
Sbjct: 209 YKLFKNATGAPSIFVHWTYIQKLFYQTITYQI-ISRTSYSLNK 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,519
Number of Sequences: 5004
Number of extensions: 52488
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)