Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0433
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916...    29   2.3  

>06_01_1113 -
           9164953-9165044,9166453-9166586,9166624-9166734,
           9166815-9167066,9167152-9168186,9168313-9169187,
           9169476-9169673
          Length = 898

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 132 SQQK*GGXMVPTQADSQSTLPPVQLFPTQCSPIVPQHDDDNLVP 1
           + QK G    P  +  ++   P   FP + + +VP+ DD + +P
Sbjct: 19  AHQKSGSNKQPDASSEETWRTPSDPFPMEITQVVPRDDDPDYIP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,857
Number of Sequences: 37544
Number of extensions: 302897
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)