Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0433
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa ...    32   0.29 
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa
           synthetase familyprotein 17 protein.
          Length = 718

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 23  CCGTIGEHCVGNSCTGGSVL-CESAWVGTIXPPYFCCEAIM 142
           CC  +  + +  +C GG++        GT+ PP  CCE ++
Sbjct: 470 CCPVVQGYGLTETCGGGTIADIHDLSTGTVGPPLTCCEILL 510


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 99   TQADSQSTLPPVQLFPTQCSPIVPQHDD 16
            T A S  TLPPVQ  P    P  P  ++
Sbjct: 1413 TMASSPPTLPPVQSVPVSSKPAPPSAEN 1440


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 99   TQADSQSTLPPVQLFPTQCSPIVPQHDD 16
            T A S  TLPPVQ  P    P  P  ++
Sbjct: 1413 TMASSPPTLPPVQSVPVSSKPAPPSAEN 1440


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 99   TQADSQSTLPPVQLFPTQCSPIVPQHDD 16
            T A S  TLPPVQ  P    P  P  ++
Sbjct: 1435 TMASSPPTLPPVQSVPVSSKPAPPSAEN 1462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,581
Number of Sequences: 27780
Number of extensions: 294564
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)