Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0433
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16120.1 68415.m01848 mannitol transporter, putative similar ...    28   4.4  
At2g16130.1 68415.m01849 mannitol transporter, putative similar ...    27   7.7  

>At2g16120.1 68415.m01848 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 511

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 572 GALTSLYYRIFLNLSVSLSFILNWMYAKC*TYQTWFFIV 456
           G LTS +  IF+N+ + L ++ N+ ++K   +  W F++
Sbjct: 151 GFLTS-FPEIFINIGILLGYVSNYFFSKLPEHLGWRFML 188


>At2g16130.1 68415.m01849 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 511

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 560 SLYYRIFLNLSVSLSFILNWMYAKC*TYQTWFFIV 456
           S +  IF+N+ + L ++ N+ +AK   +  W F++
Sbjct: 154 SSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFML 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,866
Number of Sequences: 28952
Number of extensions: 258152
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)