Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0432
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    40   0.078
UniRef50_UPI0000E21FCD Cluster: PREDICTED: hypothetical protein;...    38   0.18 
UniRef50_Q4T0V1 Cluster: Chromosome undetermined SCAF10849, whol...    34   2.9  
UniRef50_UPI0000DD820F Cluster: PREDICTED: similar to Per-hexame...    33   5.1  
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ...    33   5.1  
UniRef50_UPI0000EB01D5 Cluster: UPI0000EB01D5 related cluster; n...    33   6.7  
UniRef50_Q8EHB6 Cluster: TolB domain protein; n=4; Shewanella|Re...    33   6.7  
UniRef50_Q2JD21 Cluster: Putative uncharacterized protein; n=3; ...    33   8.9  
UniRef50_Q7XGB8 Cluster: Retrotransposon protein, putative, Ty3-...    33   8.9  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 39.5 bits (88), Expect = 0.078
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 347 TRTSLLGLNAIHRQLITQ*IV---MAAVSLRDRIRNEEIHRRCLIADIER 487
           + T  L +  I R  +TQ  +   M  VSLRDRIRNEEI RR  + DI R
Sbjct: 367 SETWSLTMGLIRRLKVTQRAMERAMLGVSLRDRIRNEEIRRRTRVTDIAR 416



 Score = 34.7 bits (76), Expect = 2.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 510 AGHFAPRTDGYSSQKVLDWRPR 575
           AGH A R DG   +KVL+WRPR
Sbjct: 426 AGHIARRADGRWGRKVLEWRPR 447


>UniRef50_UPI0000E21FCD Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 326

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = -1

Query: 370 QTKQASSSPVG*FG------TPGASPGAACLV*RDGDAESSIRRPDDPSVGCPRDGAGSS 209
           +TK+A+S+P    G      TPGA PG A  V R G  ES +  P  P     R     S
Sbjct: 93  RTKRAASAPPLSHGSRPLTPTPGAEPGPASPVTRPGRTESKMATPPPPPPHSRRGQGAPS 152

Query: 208 VVGLTTKTSLLC--PSSVCLGRVI*RSR 131
             GL  +T L    P  +  GR++ R R
Sbjct: 153 RGGLAPETRLKIARPDYIWFGRILARPR 180


>UniRef50_Q4T0V1 Cluster: Chromosome undetermined SCAF10849, whole
           genome shotgun sequence; n=3; Tetraodontidae|Rep:
           Chromosome undetermined SCAF10849, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 388

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 201 PTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDA---PGVPNYPTGLEL 356
           P +   +PS   P+  SS   + DS    RY   A P +    PGVP +P G ++
Sbjct: 107 PRSHASSPSQASPSASSSSSPVTDSGGGLRYRGNAPPFNPQAPPGVPQWPDGAQV 161


>UniRef50_UPI0000DD820F Cluster: PREDICTED: similar to Per-hexamer
           repeat protein 5; n=1; Homo sapiens|Rep: PREDICTED:
           similar to Per-hexamer repeat protein 5 - Homo sapiens
          Length = 1226

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 195 VNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPGVPNYPTGLELA 359
           + P  + P PS  HP+  SS R +   ++ +  T      +A  V   PTG   A
Sbjct: 371 IRPPAKQPGPSFPHPSPSSSAREVPTGSNAAVVTEAPTGSNAAVVTEAPTGSNAA 425


>UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and
           tau; n=2; Roseiflexus|Rep: DNA polymerase III, subunits
           gamma and tau - Roseiflexus sp. RS-1
          Length = 599

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 192 VVNPTTELP-APSLGHPTXGSSGRR-IDDSASPSRYTRQAAPGDAPGVP 332
           VV P  + P +P    PT G+SG   I ++ASPS  +  A P   PG+P
Sbjct: 378 VVRPERKTPPSPPAVQPTTGTSGTPPIIETASPSGASPVAEPAPQPGIP 426


>UniRef50_UPI0000EB01D5 Cluster: UPI0000EB01D5 related cluster; n=1;
           Canis lupus familiaris|Rep: UPI0000EB01D5 UniRef100
           entry - Canis familiaris
          Length = 415

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +3

Query: 201 PTTELPAPSLGHPTXGSSGRRI----DDSASPSRYTRQAAPGDAPGVP 332
           P    P P+      G+ G R      DS  P R   +AAPG APGVP
Sbjct: 172 PLPRHPPPTWSSGPGGTGGHRAGPSGSDSRPPPRAPPEAAPGRAPGVP 219


>UniRef50_Q8EHB6 Cluster: TolB domain protein; n=4; Shewanella|Rep:
           TolB domain protein - Shewanella oneidensis
          Length = 413

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 466 LDSRYRKIAR*NWHWQDILLLEQMAIRVKKFLIGDRAPKTIXAI 597
           L S Y    R +W+WQ   +L   A  + +F + +RAP+ I ++
Sbjct: 245 LASSYHNHGRPSWNWQGTAVLASTADGITEFYLDNRAPRVISSL 288


>UniRef50_Q2JD21 Cluster: Putative uncharacterized protein; n=3;
           Frankia|Rep: Putative uncharacterized protein - Frankia
           sp. (strain CcI3)
          Length = 183

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 201 PTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPGVPNYPTG 347
           P  ++P  S+G    G  G   + +  P +     AP D+PGVP  PTG
Sbjct: 45  PAGQVPVGSVGRAGPGGPGGSGEVAPVPHQPVHPGAP-DSPGVPGAPTG 92


>UniRef50_Q7XGB8 Cluster: Retrotransposon protein, putative,
           Ty3-gypsy subclass; n=2; Oryza sativa|Rep:
           Retrotransposon protein, putative, Ty3-gypsy subclass -
           Oryza sativa subsp. japonica (Rice)
          Length = 1264

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 201 PTTELPA---PSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPGVPNYPT 344
           P+ ELPA    S G P+ GS+ RR   S S +       PG  PG P  P+
Sbjct: 770 PSAELPAHESASPGPPSTGSAARRPPASPSSTSSMLWRPPGPPPGFPALPS 820


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,126,279
Number of Sequences: 1657284
Number of extensions: 14078945
Number of successful extensions: 35963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35942
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)