Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0432
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    28   1.1  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    27   2.6  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   3.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   4.5  
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    25   7.9  

>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 150 RPKHTELGHSREVFVVNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPGV 329
           RP     G  +++   +  T+    S GH T  S   ++ D +S +++   +   D  G+
Sbjct: 326 RPTGVRRGPYKKLSDTSNNTKSTTASSGHSTQDSLSSKMLDPSSDNQFAMSSRQMDENGM 385

Query: 330 PNYPT 344
             YP+
Sbjct: 386 AQYPS 390


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 615 IFDLIVLDELWSYYIPDPVDRMVNSRR 695
           ++DL    EL SYY P P  R+  S R
Sbjct: 291 VWDLRTYKELHSYYTPTPAQRLTLSDR 317


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 489 CEVELALAGHFAPRTDGYSSQK 554
           C+VEL L G F+P  DG+ +QK
Sbjct: 38  CDVELILNGGFSP-LDGFMNQK 58


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 365 GLNAIHRQLITQ*IVMAAVSLRDRIRNEEIHRRCLIADIERLRGRTGIGRTFC 523
           G NA+  Q   Q +      + +++  EEI RR L  DI+ L+G     R FC
Sbjct: 435 GQNALELQARIQQLERRNEDMYNKLLAEEIIRRKLHNDIQELKGNI---RVFC 484


>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 ITRPKHTELGHS-REVFVVNPTTELPAPSLGHPTXGSSGRRIDDSAS 281
           I +  HT LG+S R V + NP  E    S+ HP+      RI  + S
Sbjct: 39  IQKEDHT-LGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,559
Number of Sequences: 5004
Number of extensions: 56105
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)