Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0432
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197...    31   1.2  
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684...    30   1.5  
03_01_0090 + 718746-719998,720089-720161,720198-720254                 29   4.7  
07_03_0985 - 23140944-23141010,23141157-23141221,23141632-231416...    28   6.2  
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207           28   6.2  
03_02_0082 - 5515019-5515087,5515178-5515285,5516032-5516148,551...    28   6.2  
09_06_0153 - 21243108-21245660                                         28   8.2  
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    28   8.2  

>05_06_0237 +
           26618195-26618425,26618518-26618640,26619569-26619736,
           26619824-26621497
          Length = 731

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 271 SSIRRPDDPSVGCPRDGAGSSVVGL 197
           SS R PD  +VGC  DG GS  +G+
Sbjct: 39  SSFRLPDSRAVGCLPDGEGSWAIGM 63


>02_02_0641 +
           12566416-12566599,12567132-12567327,12568319-12568406,
           12569279-12569330,12569423-12569765,12571282-12571684,
           12571770-12571841,12572632-12572817,12573174-12573239,
           12574802-12575174,12575917-12576014,12578179-12578305,
           12578734-12578924,12579265-12579540,12579837-12579866
          Length = 894

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 369 RPSRLVLVRWGNSEHLEHHLGRLVWYS 289
           R +RL L+ W N+ H   H  RLVW S
Sbjct: 80  RTARLGLLAWSNAAHSAEHGRRLVWCS 106


>03_01_0090 + 718746-719998,720089-720161,720198-720254
          Length = 460

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 538 PSVLGAKCPANASSTSQS-FYICYQASSVNLLIS 440
           P  L AKCPAN  +TS S FY   +  S  L+I+
Sbjct: 277 PPTLIAKCPANTVNTSDSRFYHLVECDSEVLVIA 310


>07_03_0985 -
           23140944-23141010,23141157-23141221,23141632-23141696,
           23142525-23142594,23142693-23142760,23143008-23143098,
           23143186-23143251,23143376-23143471,23143778-23143876,
           23143964-23144050,23144920-23144985,23145119-23145325
          Length = 348

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 204 TTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPG 326
           +  L  P L  P  G  G R+  S+S S  ++ AAP DAPG
Sbjct: 39  SNRLLPPLLRPPRDGFRGGRLIASSSSSS-SQMAAPADAPG 78


>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
          Length = 153

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 249 SSGRRIDDSASPSRYTRQAAPGDAPGVPNYPTG 347
           ++  R +    P+R T +    DA G+PNY  G
Sbjct: 35  AADNRAESPPVPARVTAELIKADAAGIPNYSKG 67


>03_02_0082 -
           5515019-5515087,5515178-5515285,5516032-5516148,
           5516263-5516382,5518038-5518868
          Length = 414

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 216 PAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPGVPNY 338
           P+PS G     S  R     ASP+ +T Q AP +AP + ++
Sbjct: 189 PSPSRGSRGMASPARGRSGEASPNGHTMQ-APANAPSIISF 228


>09_06_0153 - 21243108-21245660
          Length = 850

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 424 PQRSNQK*GDSQKMLDSRYRKIAR*NWHWQDILLLEQMAIRVKKFLIGDR 573
           P+R +Q+  DS K +D R     + NW       +  +AIR  +F +GDR
Sbjct: 511 PKRYHQRVQDSDKHIDRRIDDATQVNWAVDVFTSVTGLAIR--QFDVGDR 558


>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 162 TELGHSREVFVVNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPGVPNYP 341
           T L   R    V+P    P P   HP+  S+ R    S++P  Y  Q    ++P +    
Sbjct: 289 TALSSFRSTVAVSP----PRPIRRHPSSQSTSRAYSISSAPRNYNLQRYYTNSPYISTSR 344

Query: 342 TGLELA 359
           + ++LA
Sbjct: 345 SNVDLA 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,256,158
Number of Sequences: 37544
Number of extensions: 409374
Number of successful extensions: 1111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)