Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0432
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7330| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)             29   2.7  
SB_21436| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-13)          28   8.4  

>SB_7330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 189 FVVNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAPGVPNYPTGLEL 356
           FV+ P TE    +    + GSS   I+   S S  T  + P DA G+ +   GLE+
Sbjct: 41  FVLPPVTEDSMENFMMFSNGSSQVSIEKEPSSSGTTDDSGPNDASGLCSSSDGLEI 96


>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
          Length = 479

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +3

Query: 201 PTTELPAPSLGHPTXGSSGRRIDDSASPS-----RYTRQAAPGDAPGVPNYPTGL 350
           PTT  P  S   P   ++  R+ DS SP+         +  P   P   NYP GL
Sbjct: 97  PTTPTPPLSQPSPASSATPTRVPDSTSPTPAQADGLRHRGTPMQTPSPFNYPLGL 151


>SB_21436| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-13)
          Length = 240

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 330 EHLEHHLGRLVWYSETATQSH 268
           E+L+  LGR++W +  ATQ H
Sbjct: 150 EYLQVDLGRVMWVTHVATQGH 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,813,667
Number of Sequences: 59808
Number of extensions: 448102
Number of successful extensions: 1198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)