Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0432
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF525398-1|AAO14994.1| 1265|Homo sapiens codanin I protein. 33 0.98
BC112059-1|AAI12060.1| 383|Homo sapiens methenyltetrahydrofolat... 32 2.3
BC112057-1|AAI12058.1| 383|Homo sapiens methenyltetrahydrofolat... 32 2.3
AK023955-1|BAB14739.1| 382|Homo sapiens protein ( Homo sapiens ... 32 2.3
AK023060-1|BAB14383.1| 371|Homo sapiens protein ( Homo sapiens ... 32 2.3
CR542055-1|CAG46852.1| 338|Homo sapiens PHYH protein. 31 4.0
S78694-1|AAB21243.1| 417|Homo sapiens lysyl oxidase protein. 31 5.2
BC066640-1|AAH66640.1| 1227|Homo sapiens congenital dyserythropo... 30 9.1
BC052568-1|AAH52568.1| 1228|Homo sapiens CDAN1 protein protein. 30 9.1
>AF525398-1|AAO14994.1| 1265|Homo sapiens codanin I protein.
Length = 1265
Score = 33.1 bits (72), Expect = 0.98
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +3
Query: 63 GVRAFAARGAVPTAYKFELNLRYRER*ITRPKHTELGHSREVFVVNPTTELPAPSLGHPT 242
G R +R PT E +L + T P + + S+++ +PT P P LG P
Sbjct: 259 GCRTKPSRRINPTPVSEERSLSKPKTCFTSPPISCVPSSKQL-QQSPTPTCPTPELGSPL 317
Query: 243 XGSSGRRIDDSASPSR 290
+G D+ A P+R
Sbjct: 318 PSRTGSLTDEPADPAR 333
>BC112059-1|AAI12060.1| 383|Homo sapiens methenyltetrahydrofolate
synthetase domain containing protein.
Length = 383
Score = 31.9 bits (69), Expect = 2.3
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +3
Query: 99 TAYKFELNLRYRER*ITRPKHTELGHSREVFVVNPTTELPAPSLGHPTXGSSGRRIDDSA 278
T +K L + + + + E ++V + LP P S GRR D+
Sbjct: 224 TWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTP 283
Query: 279 SPSRYTRQAAPGDAPG 326
P + +AAPG PG
Sbjct: 284 GPETNSMEAAPGSPPG 299
>BC112057-1|AAI12058.1| 383|Homo sapiens methenyltetrahydrofolate
synthetase domain containing protein.
Length = 383
Score = 31.9 bits (69), Expect = 2.3
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +3
Query: 99 TAYKFELNLRYRER*ITRPKHTELGHSREVFVVNPTTELPAPSLGHPTXGSSGRRIDDSA 278
T +K L + + + + E ++V + LP P S GRR D+
Sbjct: 224 TWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTP 283
Query: 279 SPSRYTRQAAPGDAPG 326
P + +AAPG PG
Sbjct: 284 GPETNSMEAAPGSPPG 299
>AK023955-1|BAB14739.1| 382|Homo sapiens protein ( Homo sapiens
cDNA FLJ13893 fis, clone THYRO1001661. ).
Length = 382
Score = 31.9 bits (69), Expect = 2.3
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +3
Query: 99 TAYKFELNLRYRER*ITRPKHTELGHSREVFVVNPTTELPAPSLGHPTXGSSGRRIDDSA 278
T +K L + + + + E ++V + LP P S GRR D+
Sbjct: 223 TWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTP 282
Query: 279 SPSRYTRQAAPGDAPG 326
P + +AAPG PG
Sbjct: 283 GPETNSMEAAPGSPPG 298
>AK023060-1|BAB14383.1| 371|Homo sapiens protein ( Homo sapiens
cDNA FLJ12998 fis, clone NT2RP3000267. ).
Length = 371
Score = 31.9 bits (69), Expect = 2.3
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +3
Query: 99 TAYKFELNLRYRER*ITRPKHTELGHSREVFVVNPTTELPAPSLGHPTXGSSGRRIDDSA 278
T +K L + + + + E ++V + LP P S GRR D+
Sbjct: 224 TWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPDTP 283
Query: 279 SPSRYTRQAAPGDAPG 326
P + +AAPG PG
Sbjct: 284 GPETNSMEAAPGSPPG 299
>CR542055-1|CAG46852.1| 338|Homo sapiens PHYH protein.
Length = 338
Score = 31.1 bits (67), Expect = 4.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 372 FRPSRLVLVRWGNSEHLEHHLGRLVWYSETATQSHRYDDLTIXXSGVLGMAPGVR 208
FRPS L++ W EH+ + G LV +T S + D GV M G++
Sbjct: 183 FRPSDLIVCAWTAMEHISRNNGCLVVLPDTHKGSLKPHDYPKWEGGVNKMFHGIQ 237
>S78694-1|AAB21243.1| 417|Homo sapiens lysyl oxidase protein.
Length = 417
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = +3
Query: 144 ITRPKHTELGHSREVFVVNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAP 323
+ R T G +R T P P+ H A PSR Q APG+ P
Sbjct: 93 LIRDNRTAAGRTRTAGSSGVTAGRPRPTARHWFQAGYSTSRAREAGPSRAENQTAPGEVP 152
Query: 324 GVPN 335
+ N
Sbjct: 153 ALSN 156
>BC066640-1|AAH66640.1| 1227|Homo sapiens congenital
dyserythropoietic anemia, type I protein.
Length = 1227
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 198 NPTTELPAPSLGHPTXGSSGRRIDDSASPSR 290
+PT P P LG P +G D+ A P+R
Sbjct: 265 SPTPTCPTPELGSPLPSRTGSLTDEPADPAR 295
>BC052568-1|AAH52568.1| 1228|Homo sapiens CDAN1 protein protein.
Length = 1228
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 198 NPTTELPAPSLGHPTXGSSGRRIDDSASPSR 290
+PT P P LG P +G D+ A P+R
Sbjct: 266 SPTPTCPTPELGSPLPSRTGSLTDEPADPAR 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,519,039
Number of Sequences: 237096
Number of extensions: 2106783
Number of successful extensions: 4686
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4685
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -