Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0432
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    29   4.2  
Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z99281-37|CAJ44244.1|  740|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical p...    28   5.6  
AY611485-1|AAT37524.1|  740|Caenorhabditis elegans epidermal gro...    28   5.6  
AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal gro...    28   5.6  
X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic int...    28   7.4  
U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate fi...    28   7.4  
U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate fi...    28   7.4  
AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 498 ELALAGHFAPRTDGYSSQKVLDWRPRTE 581
           +L  AGH A RTDG  +  + DW PR E
Sbjct: 122 KLGWAGHVARRTDGRWTTLMNDWCPRDE 149


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 127  VIENVK*LALSTQNSGTVEKFSWSTLQPNSRRHP*DTRXXDRQVVVSM 270
            ++EN+K   +  + S  + + SW TLQ     HP ++R   +  V+S+
Sbjct: 2775 IVENLKNFGVDQKTSKCLAETSWKTLQILKNYHPEESRSNVQLHVLSV 2822


>Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24d protein.
          Length = 845

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 VNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAA 308
           + P ++   PS+G+   GS  +R+DD  +PS Y    A
Sbjct: 1   MTPRSDHRGPSMGYGNGGSVDQRVDD-VTPSYYVEHLA 37


>Z99281-37|CAJ44244.1|  740|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24h protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 VNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAA 308
           + P ++   PS+G+   GS  +R+DD  +PS Y    A
Sbjct: 73  MTPRSDHRGPSMGYGNGGSVDQRVDD-VTPSYYVEHLA 109


>Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24a protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 VNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAA 308
           + P ++   PS+G+   GS  +R+DD  +PS Y    A
Sbjct: 18  MTPRSDHRGPSMGYGNGGSVDQRVDD-VTPSYYVEHLA 54


>Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24g protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 VNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAA 308
           + P ++   PS+G+   GS  +R+DD  +PS Y    A
Sbjct: 73  MTPRSDHRGPSMGYGNGGSVDQRVDD-VTPSYYVEHLA 109


>AY611485-1|AAT37524.1|  740|Caenorhabditis elegans epidermal growth
           factor receptorpathway substrate 8 splice variant B
           protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 VNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAA 308
           + P ++   PS+G+   GS  +R+DD  +PS Y    A
Sbjct: 73  MTPRSDHRGPSMGYGNGGSVDQRVDD-VTPSYYVEHLA 109


>AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal growth
           factor receptorpathway substrate 8 splice variant A
           protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 VNPTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAA 308
           + P ++   PS+G+   GS  +R+DD  +PS Y    A
Sbjct: 73  MTPRSDHRGPSMGYGNGGSVDQRVDD-VTPSYYVEHLA 109


>X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 431 DRIRNEEIHRRCLIADIERLRGRTG 505
           DR++  E   R L+AD++ LRG+ G
Sbjct: 66  DRVKKLEEQNRKLVADLDELRGKWG 90


>U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform a protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 431 DRIRNEEIHRRCLIADIERLRGRTG 505
           DR++  E   R L+AD++ LRG+ G
Sbjct: 66  DRVKKLEEQNRKLVADLDELRGKWG 90


>U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform b protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 431 DRIRNEEIHRRCLIADIERLRGRTG 505
           DR++  E   R L+AD++ LRG+ G
Sbjct: 97  DRVKKLEEQNRKLVADLDELRGKWG 121


>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 201 PTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAP 323
           PTT++ A     P+  ++     DS +P  Y  Q    DAP
Sbjct: 307 PTTKVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAP 347


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 201 PTTELPAPSLGHPTXGSSGRRIDDSASPSRYTRQAAPGDAP 323
           PTT++ A     P+  ++     DS +P  Y  Q    DAP
Sbjct: 309 PTTKVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAP 349


>Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical
           protein C38D4.9 protein.
          Length = 214

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 43  KLVQICMEFERLPLGALFQLHTNSS*IYVIENVK 144
           + VQI ++  R P G++F LH +S+  Y+++N K
Sbjct: 139 QFVQIGLQMVR-PGGSVFSLHKSSTRDYILKNAK 171


>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 299 TSRPR*CSRCSELPHRTRTSLLGLNAIHRQL 391
           T+ P+ C    ELP  TRT L  L   H +L
Sbjct: 272 TAAPKICKSEEELPRETRTELARLRCGHSRL 302


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -1

Query: 349 SPVG*FGTPGASPGAACLV*RDGDAESS----IRRPDDPSVGCPRDGAGSSVVG--LTTK 188
           SP     + GAS   +  V  +GD ES     +   D   VGC R    SS++G  L+  
Sbjct: 69  SPQSAGSSSGASDTMSLCVSDNGDHESDKLSVVSETDSGVVGCGRTSRPSSIIGPPLSRL 128

Query: 187 TSLLCPSS 164
            ++L PS+
Sbjct: 129 HNILTPST 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,142
Number of Sequences: 27780
Number of extensions: 334985
Number of successful extensions: 857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)