Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0432
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.91 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 272 LCVAVSLYQTSRPR*CSRCSELPHRTRTSLLGLNAIHRQLITQ*IVMAAVSLRDRIRNEE 451
           LC+A ++   S    C   SE  + TR++   L  +    IT  +     +L+ RIR  +
Sbjct: 16  LCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLDPGAITGLVASLDGALKLRIRCSD 75

Query: 452 IH 457
           +H
Sbjct: 76  VH 77


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -1

Query: 256 PDDPSVGCPRDGAGSSVVGLTTKTSLLCP 170
           PDDP +GC      S       +   LCP
Sbjct: 428 PDDPPIGCECKTCNSKTKCCFAQDDGLCP 456


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 358 ASSSPVG*FGTPGASPGAACLV*RDGDAESSI 263
           +SS+P G    PGA+  AA L  R   +E S+
Sbjct: 147 SSSAPTGSSCGPGAAAAAALLSKRRSVSECSL 178


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 VSMTLRRRLAIPDKPPQVMLQVFRITPPD 348
           +   +RR    P +PPQ ++  +R T  D
Sbjct: 113 IETIIRRNSRYPLRPPQEVISHYRRTRRD 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,097
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)