Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0432
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13222.1 68416.m01655 expressed protein                             29   2.2  
At2g20870.1 68415.m02459 cell wall protein precursor, putative i...    29   3.9  
At1g01700.1 68414.m00088 expressed protein contains Pfam profile...    28   5.2  
At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to cyto...    27   9.0  
At3g58440.1 68416.m06513 meprin and TRAF homology domain-contain...    27   9.0  
At3g03250.1 68416.m00321 UTP--glucose-1-phosphate uridylyltransf...    27   9.0  

>At3g13222.1 68416.m01655 expressed protein
          Length = 567

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 PTXGSSGRRIDDSASPSRYTRQAAPGDAPGVPNYPTGLELA 359
           P  GS G ++ +   P   T QAA  DAP + +YP    LA
Sbjct: 337 PEEGSEGDKVKNEVLPITDTHQAAKCDAPPI-SYPDQYSLA 376


>At2g20870.1 68415.m02459 cell wall protein precursor, putative
           identical to Putative cell wall protein precursor
           (Swiss-Prot:P47925) [Arabidopsis thaliana]; weak
           similarity to mu-protocadherin (GI:7861967) [Rattus
           norvegicus]
          Length = 140

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 159 HTELGHSREVFVVNPTTELPAPSLGHPTXGSSGR 260
           HT+L    +  V NP  E P P++G  T GS+G+
Sbjct: 101 HTQLPGGDDTLVPNPGFEAPTPTIGAGT-GSNGQ 133


>At1g01700.1 68414.m00088 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 485

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 561 DWRPRTENNXSXSKLFSTIFDL 626
           DW   TE+N S S  F T+FDL
Sbjct: 75  DWPVLTESNNSASSNFPTVFDL 96


>At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to
            cytochrome P450 71B10 (SP:Q9LVD2) [Arabidopsis thaliana]
          Length = 1483

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 660  VCNMTTARRVLLNQISY*TVLNXXNCFRCAVANQELFDS 544
            +C+   +R V LN I+Y +++N      C V    LFDS
Sbjct: 1189 LCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDS 1227


>At3g58440.1 68416.m06513 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 601

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 502 WHWQDILLLEQMAIRVKKFLIGDR 573
           W +QD LLLE++    + FL+ DR
Sbjct: 101 WGFQDFLLLEKLVNIAEGFLVNDR 124


>At3g03250.1 68416.m00321 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 469

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 30  LDSLKVSSDLYGVRAFAARGAVPTAYKFELNLRYRER*ITRPKH 161
           LDSLKVS D++   +   +G V  A K  + L   +R +   K+
Sbjct: 419 LDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKN 462


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,979,051
Number of Sequences: 28952
Number of extensions: 306990
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)