Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0431
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.2  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.3  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 186 NINYTKASIFPRRSYS*MNIIETLIF 263
           N+NY+K  I    +Y  + II T++F
Sbjct: 31  NVNYSKIGIVQTVAYFVIFIILTIVF 56


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 42  PPSTLGHNSKTVTPSYKVQYSFAKLTALMLLFIHVNSQYTLQPK 173
           P  T    S + TPS+  + SF+  ++      H  +    +PK
Sbjct: 192 PTPTCSEASSSPTPSHSSESSFSAASSYTNTIYHQENFENYEPK 235


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 254 SFDYIHS*ITSARKDRCLRVINIKSVKFWL 165
           S D   S + ++ ++ C+ + N+K +KF L
Sbjct: 56  SLDGNSSDLENSSEENCVSMSNLKKLKFLL 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,397
Number of Sequences: 336
Number of extensions: 3831
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)