Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0431
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.4  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.9  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 584 TTVPRHFCVPPNFKSVPP 637
           TT P+H+CV PN   + P
Sbjct: 39  TTAPKHYCVRPNSGKIEP 56


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 114  LTALMLLFIHVNSQYTLQPKFYRFNINYTKASIFPRRSYS*MNIIETL 257
            L  LML+ I++ + YT+ P       +   AS++P   Y    ++E L
Sbjct: 1186 LQLLMLVIINLGAMYTVVPVCRYRQFDSLTASLYPEGCYQLKPVLEWL 1233


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 567 YTSDSQPLCRGTFVCRQISKVCRQILQVYN 656
           Y S  + LC GTF C  +   C  +L+  N
Sbjct: 913 YLSKKESLCSGTFSC--LLACCNSVLRTQN 940


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,614
Number of Sequences: 5004
Number of extensions: 59465
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)