Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0431
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)                30   2.1  
SB_712| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.6  

>SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)
          Length = 318

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 312 VFQYKHMLLYKCDIFWKILKFRLYSF 235
           +  Y ++ LY  +  WKI+ FR+Y F
Sbjct: 30  IINYLYVTLYTMETIWKIVAFRIYYF 55


>SB_712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNFASI 652
           + T  P++F VPP + +VPP + +I
Sbjct: 15  YFTVPPQYFTVPPQYFAVPPQYFTI 39



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNFASI 652
           + T  P++F VPP + ++PP + +I
Sbjct: 22  YFTVPPQYFAVPPQYFTIPPQYFTI 46



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNFASI 652
           + T  P++F VPP + +VPP + +I
Sbjct: 125 YFTVPPQYFTVPPQYFTVPPQYFTI 149



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 560 YYLYQ*FSTTVPRHFCVPPNFKSVPPNFASI 652
           Y+  Q F T  P++F VPP + +VPP + ++
Sbjct: 106 YFTGQYF-TIPPQYFTVPPQYFTVPPQYFTV 135



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNFASI 652
           + T  P++F VPP + +VPP + ++
Sbjct: 118 YFTVPPQYFTVPPQYFTVPPQYFTV 142



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNFASI 652
           + T  P++F VPP + +VPP + ++
Sbjct: 78  YFTIPPQYFTVPPQYFTVPPQYFTV 102



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNFASI 652
           + +  P++F +PP + +VPP + ++
Sbjct: 71  YFSVAPKYFTIPPQYFTVPPQYFTV 95



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNF 643
           + T  P++F VPP + +VPP +
Sbjct: 85  YFTVPPQYFTVPPQYFTVPPQY 106



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 578 FSTTVPRHFCVPPNFKSVPPNFASI 652
           + T  P++F VPP + ++PP + ++
Sbjct: 132 YFTVPPQYFTVPPQYFTIPPQYFTL 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,389,421
Number of Sequences: 59808
Number of extensions: 407406
Number of successful extensions: 866
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)