Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0431
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    31   0.79 
AL110484-3|CAB54394.1|  243|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81492-1|CAB04025.2|  326|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    28   5.6  
AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical ...    28   5.6  

>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -2

Query: 390 GLFSWTLFFKTIFKIFVFCVTFLQRYVFQYKHMLLYKCDIFWKILKFR--LYSFM 232
           G     +F+     + +   + L+ + F+Y  + +YK D+F K+L+F+  LY F+
Sbjct: 90  GFSGMFIFYGLAQSVMLTVGSILEMFFFRYNLISVYKNDLFKKLLRFQVLLYRFL 144


>AL110484-3|CAB54394.1|  243|Caenorhabditis elegans Hypothetical
           protein Y38E10A.3 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 289 KHVFILKNVTLKKRNAKNKY--LENCFKKQRPREKPSKLRXNLQLV 420
           K V   K   L+K  A+NKY   ENC +K R +E+ S  R    L+
Sbjct: 141 KEVLRQKEEELEKLMAENKYNYFENCAEKCRIQEETSAARREADLL 186


>Z81492-1|CAB04025.2|  326|Caenorhabditis elegans Hypothetical
           protein E03H4.2 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 384 FSWTLFFKTIFKIFVFCVTFLQRY 313
           F W LF   +F +  FC+ + Q+Y
Sbjct: 16  FRWILFGVLVFTVVNFCINYTQKY 39


>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 354 FKIFVFCVTFLQRYV-FQYKHMLLYKC--DIFWKILKFRLYSFM 232
           F  F+ C+        F Y+H +  KC  D  W + KF LYS +
Sbjct: 104 FFTFILCLQVPALLTCFIYRHQVAAKCSPDKTWSLSKFHLYSIL 147


>AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical
           protein R193.3 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 289 KHVFILKNVTLKKRNAKNKYL----ENCFKKQRPREKPSKLRXNLQL 417
           K++F      LKKR + +K L    + CFKKQ+ ++K  + +  +Q+
Sbjct: 13  KNMFQKTKTCLKKRKSVSKKLFRKTKTCFKKQKNKDKQIRNKDKVQI 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,726
Number of Sequences: 27780
Number of extensions: 330450
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)