Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0430
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    59   4e-10
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          25   8.3  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
 Frame = +2

Query: 287 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRX 460
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     +  
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 461 FLTIXLGF 484
           ++TI L F
Sbjct: 176 YMTIALSF 183



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 511 YIGASFTIAXRIYGSTFFIATGFHGI 588
           Y  A FTI+  +YG++F+ ATG HGI
Sbjct: 193 YWNAPFTISDSVYGASFYFATGLHGI 218



 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 147 RDISREGTYQGKHTILVNKGLR*G 218
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 579 KXCCYEKSGPINSXSNCKRSSYI 511
           K   Y+K  P NS S+C R+S++
Sbjct: 210 KGFIYKKIEPSNSLSSCLRNSFV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,199
Number of Sequences: 5004
Number of extensions: 22491
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)