Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0430
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   2.5  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   2.5  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   2.5  
Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    27   7.5  
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    27   7.5  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   10.0 
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    27   10.0 
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    27   10.0 

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 323 PSRITPFNPFQIPLLNTIIL 382
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 323 PSRITPFNPFQIPLLNTIIL 382
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 323 PSRITPFNPFQIPLLNTIIL 382
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical
           protein T09E11.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 418 LIDRE*LLTNKTKXIFNYFXRILXYYFTXI*YIGA 522
           LID E LL NKT   F +F      YFT I ++ A
Sbjct: 526 LIDYEPLLFNKTSNRFEFFDSRGFLYFTVINHLSA 560


>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 418 LIDRE*LLTNKTKXIFNYFXRILXYYFTXI*YIGA 522
           LID E LL NKT   F +F      YFT + ++ A
Sbjct: 611 LIDYEPLLFNKTSNRFEFFDSRGFLYFTIVNHLSA 645


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 418 LIDRE*LLTNKTKXIFNYFXRILXYYFTXI 507
           LID E LL NKT   F YF      YFT +
Sbjct: 619 LIDYEPLLFNKTTNRFEYFDSRGFLYFTAV 648


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 418 LIDRE*LLTNKTKXIFNYFXRILXYYFTXI*YIGA 522
           +ID E LL NKT   F +F      YFT + ++ A
Sbjct: 658 MIDYEPLLFNKTSNRFEFFDNRGFLYFTGVNHLSA 692


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 329 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 442
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 329 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 442
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 329 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 442
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,384
Number of Sequences: 27780
Number of extensions: 117716
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)