Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0429
         (702 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q951A7 Cluster: Ymf75; n=4; Tetrahymena|Rep: Ymf75 - Te...    34   2.9  
UniRef50_Q8IK96 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_A6LU74 Cluster: Integral membrane sensor signal transdu...    33   9.0  

>UniRef50_Q951A7 Cluster: Ymf75; n=4; Tetrahymena|Rep: Ymf75 -
           Tetrahymena thermophila
          Length = 190

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 449 IFLSSILFVYSVALAKSVIIKYILVVFHIEPIIIFKL*FPNNYSGFRL 592
           + +  ILF Y + + K   IKYIL  F++   I+F L   NNY  +++
Sbjct: 93  LLIELILFKYKLIILKFSSIKYIL-NFNVRKFILFNLFLINNYKAYKI 139


>UniRef50_Q8IK96 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 4638

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = +3

Query: 282  ENIEKERRMLIIHNKYIKSIEKTLRTLPCI*QTHAYICTLLFIVKVVTNKIENRLIFFCL 461
            E +++++++L ++      + +    +  I   + YIC LL  ++  TN+   + IF C+
Sbjct: 3771 ERLKRDKKLLFLYTINSFRVIQIYNNISNIIFKYKYICILLGKLRYFTNQDILKYIFRCI 3830

Query: 462  QYYLS 476
            QYY S
Sbjct: 3831 QYYWS 3835


>UniRef50_A6LU74 Cluster: Integral membrane sensor signal
           transduction histidine kinase precursor; n=1;
           Clostridium beijerinckii NCIMB 8052|Rep: Integral
           membrane sensor signal transduction histidine kinase
           precursor - Clostridium beijerinckii NCIMB 8052
          Length = 504

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 28/85 (32%), Positives = 45/85 (52%)
 Frame = +3

Query: 204 VVYVKRKLCTAFTEIARRSMKFSTLIENIEKERRMLIIHNKYIKSIEKTLRTLPCI*QTH 383
           V Y+  +L  A TE+   ++K   L E+IEKER++  +  ++I S+   LRT   + Q +
Sbjct: 241 VNYLSGELSRAITEL---NIKNKRLEEDIEKERKIDEMRKEFISSVSHELRTPLSVIQGY 297

Query: 384 AYICTLLFIVKVVTNKIENRLIFFC 458
           A       +V  VT   E+R  F+C
Sbjct: 298 AE-----GLVSNVTESDEDRK-FYC 316


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,169,217
Number of Sequences: 1657284
Number of extensions: 11082860
Number of successful extensions: 20674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20670
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)