Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0429
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.4  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 358 VRNVFSXDLMY--LLCIINILRSFSIFSISVENFILRRAISVKAVQSFRFT 212
           V N+F  D     +L  ++ILRSF++ + +  + + R+  S     SF F+
Sbjct: 255 VANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASYGVYGSFHFS 305


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 231 TAFTEIARRSMKFSTLIENIEKERRMLIIH 320
           T FTEIAR SM  STL  ++EK   M   H
Sbjct: 144 TIFTEIARYSMYHSTL--SVEKLDEMRFAH 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,688
Number of Sequences: 5004
Number of extensions: 53117
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)