Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0429
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1048 + 23936193-23936376,23936731-23936915,23937332-239373...    29   2.7  
03_02_0633 + 9978193-9978376,9978661-9978845,9979284-9979466,997...    29   2.7  
05_06_0173 - 26140725-26140838,26141125-26141352,26141440-261415...    29   3.6  
02_03_0365 - 18198669-18198809,18198887-18198979,18199078-181991...    28   6.2  

>08_02_1048 +
           23936193-23936376,23936731-23936915,23937332-23937334,
           23937354-23937536,23937627-23937758,23937889-23938074,
           23938412-23938501,23938559-23938654,23938735-23938875,
           23938955-23939185,23939564-23939677
          Length = 514

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL*RILR 294
           I Y + C TL    EN   L +K++GG+   P HL  + R
Sbjct: 205 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSALAR 244


>03_02_0633 +
           9978193-9978376,9978661-9978845,9979284-9979466,
           9979564-9979695,9979826-9980011,9980381-9980470,
           9980540-9980623,9980704-9980844,9980919-9981146,
           9981511-9981624
          Length = 508

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL*RILR 294
           I Y + C TL    EN   L +K++GG+   P HL  + R
Sbjct: 204 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSALAR 243


>05_06_0173 -
           26140725-26140838,26141125-26141352,26141440-26141580,
           26141707-26141790,26141866-26141955,26142048-26142233,
           26142327-26142458,26142559-26142741,26142967-26143151,
           26143915-26144089
          Length = 505

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL 279
           I Y + C TL    EN   L +K++GG+   P HL
Sbjct: 201 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHL 235


>02_03_0365 -
           18198669-18198809,18198887-18198979,18199078-18199138,
           18199291-18199336,18199417-18199682,18199766-18200744,
           18201012-18201564,18201661-18201909,18201995-18202234
          Length = 875

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 216 KRKLCTAFTEIARRSMKFSTLIENIEKERRMLIIHNKYIKSIEKTLRTLPCI*QTHAY 389
           K KL T    I R  + F      I +   +LII    I     TL+T PC  Q + +
Sbjct: 728 KEKLITVAQYIGRAFLHFQNKRAKIRESSWLLIILTIIISVYSSTLKTEPCAYQYYKF 785


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,706
Number of Sequences: 37544
Number of extensions: 250199
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)