Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0429
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21776| Best HMM Match : DUF1469 (HMM E-Value=0.52)                  33   0.22 
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_56298| Best HMM Match : GCC2_GCC3 (HMM E-Value=6.4)                 30   1.6  
SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14)                      29   2.8  
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   29   3.6  

>SB_21776| Best HMM Match : DUF1469 (HMM E-Value=0.52)
          Length = 200

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 452 FLSSILFVYSVALAKSVIIKYILVVFHIEPII 547
           FLS+I+FV S+ +   VII  ++++ HI  +I
Sbjct: 165 FLSTIIFVMSIIIIPIVIIHIVIIIIHIAKVI 196


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +3

Query: 252  RRSMKFSTLIENIEKERRMLIIHNKYIKSIEKTLRTLPCI*QTHAYI 392
            R S K+S ++E +++++R+L ++ K +++  KT R +     THA +
Sbjct: 2457 RFSWKYSLILEIVKQQQRLLKMNQKKVQNAIKTQRKVAATTVTHAMV 2503


>SB_56298| Best HMM Match : GCC2_GCC3 (HMM E-Value=6.4)
          Length = 154

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 448 YFFVFNIICL*CSLGEICDYKVYTRSISHRTNNNIQTMISK 570
           +F+  N +CL CSLG + +Y +Y   ++    +     ISK
Sbjct: 96  FFYNRNTVCLSCSLGYVGEYYLYNFRLNFPEESTTSVHISK 136


>SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14)
          Length = 842

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 452 FLSSILFVYSVALAKSVIIKYILVVFHIEPIIIFKL 559
           FL  I+FV  + +   +IIK I+++  I  +II K+
Sbjct: 756 FLEWIMFVTIIIIILIIIIKIIIIIIKINIVIIIKM 791


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -3

Query: 379 VCQIHGSVRNVFSXDLMYLLCIINILRSFSIFSISVENFILRRAI------SVKAVQSFR 218
           VC+I G   NV S D+M +  +  +L     F +  E F +RR +      +V   ++FR
Sbjct: 767 VCKIKGLHLNVRSADVMTMQTMETLLEGLEGFRVVTEPFSIRRDVRRWILHTVPTQKTFR 826

Query: 217 FTY 209
             Y
Sbjct: 827 IVY 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,746
Number of Sequences: 59808
Number of extensions: 335608
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)