Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0429
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical...    28   7.4  
AF016452-2|AAB66016.2|  476|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF016444-2|AAN73877.1|  320|Caenorhabditis elegans Serpentine re...    28   7.4  

>Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical
           protein M05D6.2 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 182 FTGYFVTRCIREAKTLYRFYGNCAAEYE 265
           FT  F+  C+   KT Y  Y N   E++
Sbjct: 399 FTSKFLRLCVHNRKTFYAMYSNLIQEFQ 426


>AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical
           protein Y111B2A.20 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 367 HGSVRNVFSXDLMYLLCIINILRSFSIFSISVENFIL-RRAISVKAVQSFRFT 212
           HG VR+  +    +L+C   IL  + +F I  E  +  +  +  ++++ F FT
Sbjct: 11  HGEVRSWLAESGHFLICAGGILICYFVFGIQQERIVQGKYELPDESIEKFTFT 63


>AF016452-2|AAB66016.2|  476|Caenorhabditis elegans Hypothetical
           protein T05H4.10 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 216 KRKLCTAFTEIARR-SMKFSTLIENIEKERRMLIIHNKYIKSIEK 347
           K + C A T  AR  S K  +++ENI K+ +      K + SIEK
Sbjct: 413 KEQACKAATSAARICSKKILSILENISKDPQFAGEQQKAVISIEK 457


>AF016444-2|AAN73877.1|  320|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 10 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 443 INIFLSSILFVYSVALAKSVIIKYILVVFHIEPIIIFKL 559
           +N+   +I FV ++A + ++    +  +FHI  IIIF++
Sbjct: 16  LNLIAGAIAFVLTIAASYALWKSRVTKLFHINVIIIFQV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,284
Number of Sequences: 27780
Number of extensions: 288374
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)