Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0429
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 693 YHHAKYINTRVXFLVHKQTRSITFLLQTS 607
           YH  K I  ++ + +HKQ  +  FL + S
Sbjct: 250 YHMPKEIRGQLYYFLHKQLMTRYFLERMS 278


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 693 YHHAKYINTRVXFLVHKQTRSITFLLQTS 607
           YH  K I  ++ + +HKQ  +  FL + S
Sbjct: 250 YHMPKEIRGQLYYFLHKQLMTRYFLERMS 278


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 147 IIKIINDD*FYFLRGI 194
           +IK IN D F+F+ G+
Sbjct: 6   VIKYINFDRFFFIEGM 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,435
Number of Sequences: 438
Number of extensions: 3694
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)