Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0429
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11) ide...    29   3.0  
At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11) ide...    29   3.0  
At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11) ide...    29   3.0  
At3g01090.2 68416.m00014 Snf1-related protein kinase (KIN10) (SK...    29   3.0  
At3g01090.1 68416.m00013 Snf1-related protein kinase (KIN10) (SK...    29   3.0  

>At3g29160.3 68416.m03654 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 359

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL 279
           I Y + C TL    EN   L +K++GG+   P HL
Sbjct: 207 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHL 241


>At3g29160.2 68416.m03653 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 512

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL 279
           I Y + C TL    EN   L +K++GG+   P HL
Sbjct: 207 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHL 241


>At3g29160.1 68416.m03652 Snf1-related protein kinase (KIN11)
           identical to protein kinase AKin11 GI:1729444 from
           [Arabidopsis thaliana]
          Length = 512

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL 279
           I Y + C TL    EN   L +K++GG+   P HL
Sbjct: 207 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHL 241


>At3g01090.2 68416.m00014 Snf1-related protein kinase (KIN10)
           (SKIN10) identical to Snf1-related protein kinase, KIN10
           SP:Q38997 from [Arabidopsis thaliana]
          Length = 535

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL 279
           I Y + C TL    EN   L +K++GG+   P HL
Sbjct: 229 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHL 263


>At3g01090.1 68416.m00013 Snf1-related protein kinase (KIN10)
           (SKIN10) identical to Snf1-related protein kinase, KIN10
           SP:Q38997 from [Arabidopsis thaliana]
          Length = 512

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 178 IFYGVFCNTLYT*SENFVPLLRKLRGGV*NFP-HL 279
           I Y + C TL    EN   L +K++GG+   P HL
Sbjct: 206 ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHL 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,081
Number of Sequences: 28952
Number of extensions: 233745
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)