Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0427
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.039
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   1.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   4.5  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   5.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   7.8  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   7.8  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 59  MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLXYESQGKGSII 214
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 519 HNTKYNQYLKMSTTTCNCNSRDRVVYGG 602
           +++ YN+   M T++C+C+S  +  YGG
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGG 73


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 72  ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 182
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 681 DERTGRRLSYLAGLEEPLLPGAVSAVARRIQHGHD 577
           D R+G+ L    G +EP+L  A++   +R+  G D
Sbjct: 354 DVRSGQLLGEYTGHQEPILCMAITPDGKRVVTGSD 388


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 33  NFSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRA 179
           N S  + C  SP A A  + P+TL         T ASS  T+  + V A
Sbjct: 242 NDSFMVGCIYSP-AEAKEHVPKTLRNSNKDLEMTDASSSETSMSIPVHA 289


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 14  NAPNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSIL 145
           N P    L+ +FA    +  + + + +A  SN + +EK+ ++I+
Sbjct: 267 NRPGINNLINIFAAISDSTPSDIAQANASCSNAEFKEKVSSAII 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,261
Number of Sequences: 5004
Number of extensions: 48920
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)