Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0427
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    28   6.2  
01_06_1618 - 38681729-38683989,38685577-38685796                       28   8.1  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = -1

Query: 255 VRLLSMIRLXTTFWMMEPLPWL-----SXSKL*RTALS*SPVRMLLYSFSSRSWLEVSAD 91
           V  L+++ L    W + P   L     + S      L  SP   +  SF S +    S D
Sbjct: 33  VASLALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTD 92

Query: 90  SSTTPALAASMHIANTTR 37
           ++T P   A+  +A TTR
Sbjct: 93  TATVPTTTAAARVAATTR 110


>01_06_1618 - 38681729-38683989,38685577-38685796
          Length = 826

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 245 KRRTPWSTATSCGS 286
           +RR PWS+++SCGS
Sbjct: 8   RRRRPWSSSSSCGS 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,631
Number of Sequences: 37544
Number of extensions: 362456
Number of successful extensions: 1138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)