Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0427
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 29   3.6  
SB_24753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)           28   8.3  

>SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 547 FKYWLYLVLWILKTLCCSP 491
           F+ WL L+LW++  + CSP
Sbjct: 149 FRKWLPLLLWLISLIICSP 167


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 229 QPDH*QETDTMEYCYKLWVGNG 294
           +P H   T T++Y Y+LW G G
Sbjct: 753 RPRHPSSTSTVKYRYRLWTGKG 774


>SB_24753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +2

Query: 503 ECLQDPQH*VQPVLEDEYDDLQLQQS*PCCIRRATALTAPGSNGSSSPAKYDKRRPVLSS 682
           EC++  Q     + E   + L  Q      +  +  L +     ++SPAKY K+RP+L+ 
Sbjct: 22  ECIESLQETATSISEAANEFLPYQDEPIADVPASRGLFSLYFAANASPAKYRKKRPLLAG 81

Query: 683 YNRQ 694
             R+
Sbjct: 82  NRRR 85


>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 324 KL*THHGRKLCQDHLQXLQPRSEAR 398
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)
          Length = 835

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 455 ILNSSVGSSLPCGRTTECLQDPQH 526
           +LN  +G  +PCGR T+C+ + +H
Sbjct: 553 LLNYKIG--VPCGRGTDCVSNAEH 574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,786,542
Number of Sequences: 59808
Number of extensions: 403413
Number of successful extensions: 961
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)