Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0427
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    29   3.2  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    29   3.2  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    29   3.2  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 54  CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWXMRAKARAP 209
           CA +  A ++LNY RT L+    +NC     P TT + +  A      + AP
Sbjct: 38  CATTCGACSNLNYTRTCLS-DGLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 112 RPRGETVQQHPHRRLRQCCPSELGX*EPRQGLHHPEC 222
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 112 RPRGETVQQHPHRRLRQCCPSELGX*EPRQGLHHPEC 222
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 112 RPRGETVQQHPHRRLRQCCPSELGX*EPRQGLHHPEC 222
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 316 FPLNFRLIMAGNYVKIIYSXYNLALKLGS-TTNPSNETIAYGDG 444
           FP+N+  I + NY+      YN+ LK     T+  N+ +   DG
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDG 360


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 280 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 366
           W+ +GQEI R Y PL   N   +  G Y++I+
Sbjct: 13  WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,498
Number of Sequences: 27780
Number of extensions: 292255
Number of successful extensions: 1002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)