Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0427
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    35   0.059
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    35   0.059
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   1.7  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    28   5.1  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   9.0  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    27   9.0  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 86  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLXYESQGKGSIIQNVVXNLIIDKRRT 256
           +L  +  NQ  E EKL+  NS L+  Y  ++  S  +E+Q K  + QNV    ++DK RT
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 344

Query: 257 PWSTATSCG 283
             + + S G
Sbjct: 345 EQAGSFSRG 353


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 86  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLXYESQGKGSIIQNVVXNLIIDKRRT 256
           +L  +  NQ  E EKL+  NS L+  Y  ++  S  +E+Q K  + QNV    ++DK RT
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 345

Query: 257 PWSTATSCG 283
             + + S G
Sbjct: 346 EQAGSFSRG 354


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 59  MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 160
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 180 WXMRAKARAPSSRM*XXT*SLTRDGHHGVL 269
           W  R +  APS ++   T    ++GHHGVL
Sbjct: 835 WSNREEREAPSIKIIFPTIERVKNGHHGVL 864


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 33  NFSLYLRCACSPPAR--ASLN---YPRTLLTKTSRRNCTT 137
           NFSL L+C   PP +    LN   +P TL+ K+    CTT
Sbjct: 228 NFSLDLQCVFHPPKQNPHDLNIHDHPLTLMPKSISFTCTT 267


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 262 EYCYKLWVGNGQEIVRKYFPLNF 330
           EY  KL + +G +   KYFPL F
Sbjct: 396 EYQLKLMIASGVDAANKYFPLAF 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,051
Number of Sequences: 28952
Number of extensions: 269434
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)