Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0425
         (517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BTQ5 Cluster: Chromosome undetermined scaffold_128, w...    36   0.72 
UniRef50_P90649 Cluster: 156D suface antigen; n=8; Paramecium|Re...    33   2.9  
UniRef50_Q46186 Cluster: Basic protein; n=1; Clostridium pasteur...    32   6.8  

>UniRef50_A0BTQ5 Cluster: Chromosome undetermined scaffold_128, whole
            genome shotgun sequence; n=6; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_128, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 2499

 Score = 35.5 bits (78), Expect = 0.72
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 474  VYEYCCWDTVHVTCGRCEXXXXXXXXXXXSRTGAATYLLGAVAAWGEAVDASSSC 310
            +YEYC  D  +    +C+           S T  A YL G +      +DA+S C
Sbjct: 1711 IYEYCSGDATNTATAKCKPRTCADNTTASSDTDCAAYLKGCITKGTGCIDATSQC 1765


>UniRef50_P90649 Cluster: 156D suface antigen; n=8; Paramecium|Rep:
            156D suface antigen - Paramecium primaurelia
          Length = 2543

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 471  YEYCCWDTVHVTCGRCEXXXXXXXXXXXSRTGAATYLLGAVAAWGEAVDASSSC 310
            YEYC  D  +    +C+           S T  A YL G +      +DA+SSC
Sbjct: 1738 YEYCSGDAGNTATSKCKVRTCADNTTAISDTECAAYLKGCITKGTGCLDATSSC 1791


>UniRef50_Q46186 Cluster: Basic protein; n=1; Clostridium
           pasteurianum|Rep: Basic protein - Clostridium
           pasteurianum
          Length = 461

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -3

Query: 137 KNSHIYTEITNAGWFSLHLESSDRVRVS 54
           KN + YT I N+G F ++L+ S++V++S
Sbjct: 319 KNIYYYTSINNSGLFKINLDGSNKVKLS 346


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,546,732
Number of Sequences: 1657284
Number of extensions: 7258468
Number of successful extensions: 18047
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17936
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)