Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0425
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.2  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   3.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   3.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   8.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 104 HLLFLYKYDYF*VFLSRFFTVIMICVEFF--NNYFY 205
           HLLFL    YF V L  +   I+  V F     YFY
Sbjct: 69  HLLFLLCSGYFTVHLLFYCPFIIFTVHFLLCTYYFY 104


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 203 YSGAQQSHCLLRINRTVKCCYRSSRE 280
           YSG    +CLL +  T+   Y S  E
Sbjct: 277 YSGMYSMYCLLILLTTIVASYGSVTE 302


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 203 YSGAQQSHCLLRINRTVKCCYRSSRE 280
           YSG    +CLL +  T+   Y S  E
Sbjct: 277 YSGMYSMYCLLILLTTIVASYGSVTE 302


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +2

Query: 149 SRFFTVIMICVEFFNNYFYSGAQQSHCLLRINRTVKCCYRSSRE 280
           S+F T  +IC E    +++  A+        N      +R++R+
Sbjct: 356 SKFRTGFIICSESNRKFYFKRARNGTFSTTANSCRSSTFRNNRD 399


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 383 RDHWKLE*CCQENSHLPHVT 442
           ++ WK + C  ++SH  H T
Sbjct: 133 KNGWKGKTCSLKDSHCDHTT 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,957
Number of Sequences: 336
Number of extensions: 2208
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)