Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0425
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   3.8  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   3.8  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   8.9  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   8.9  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   8.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.9  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 210 GHSKATAYYELIEPSNVVTEVVENG 284
           GH K  AY E  EPS V   ++ NG
Sbjct: 93  GHPKGFAYIEFSEPSLVPNALLLNG 117


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 183 NFLTIIFIQGHSKATAYY--ELIEPSNVVTEVVENGPVSI 296
           +F+T++F    S+   +    ++ P N+ T +V  GP  +
Sbjct: 574 DFITLLFSDEQSRILPFSCDHIVPPENITTILVSQGPAGV 613


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 446 TVSQQQYSYTENNREQYTKKKKKK 517
           T+S+ + SY +NN+ + T K  K+
Sbjct: 238 TISKPRRSYVQNNKSEQTIKPSKQ 261


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 492 CSRLFSVYEYCCWDTVHVTCGRC 424
           C   + ++ YCC    HV C  C
Sbjct: 197 CDCGYCLHVYCCKHLAHVNCINC 219


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 48  LMRYSDSIRTFQME*KPARICYFCINMTIFRCF 146
           L+  S S RTF+   K A++  FCI +++F  F
Sbjct: 62  LLFNSLSARTFRNLTKCAKVVNFCILISLFNVF 94


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 161  TVIMICVEFFNNYFYS 208
            TV ++C   FNNYF+S
Sbjct: 1810 TVGLLCKNSFNNYFWS 1825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,495
Number of Sequences: 5004
Number of extensions: 33352
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)