Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0425
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_18511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 130 LFLGVFITIFYCHYDMRGIF*QLFLFRGTAKPLPT 234
           L L VFI  F     +RG+F Q + F+G   P+ T
Sbjct: 127 LGLYVFILYFILRNQVRGVFKQTYAFQGEPPPIQT 161


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 137 KNSHIYTEI-TNAGWFSLHLESSDRVRVSHKSN*VRYRF 24
           K+S I++++  N+G++ +HL+   ++R +  +   R+RF
Sbjct: 528 KDSSIFSKLDANSGFWQIHLDDESKLRTTFVTPFRRFRF 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,965
Number of Sequences: 59808
Number of extensions: 229518
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)