Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0425
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-...    28   4.6  

>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
           protein R13H4.1 protein.
          Length = 1305

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 119 TEITNAGWFSLHLESSDRVRVSH 51
           T  T+ GWFS H+E    V +S+
Sbjct: 113 TPATSVGWFSTHIEKKTPVEISN 135


>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
           nephrocystin-4-like protein protein.
          Length = 1305

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 119 TEITNAGWFSLHLESSDRVRVSH 51
           T  T+ GWFS H+E    V +S+
Sbjct: 113 TPATSVGWFSTHIEKKTPVEISN 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,276,044
Number of Sequences: 27780
Number of extensions: 186553
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)