Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0425
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein ...    27   7.5  
At1g35625.1 68414.m04426 protease-associated zinc finger (C3HC4-...    27   7.5  
At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put...    27   7.5  

>At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 476

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 513 FFFFFVYCSRLFSVYEYC-CW 454
           F+F FV CS L  +Y +  CW
Sbjct: 202 FYFMFVLCSTLLCIYVHVFCW 222


>At1g35625.1 68414.m04426 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 279

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 207 QGHSKATAYYELIEPSNVVTEVVENGPVSITAAV 308
           QGHS+         P+ V T V+E G  S+T A+
Sbjct: 163 QGHSRMPKDLLQSMPTEVYTGVLEEGSTSVTCAI 196


>At1g02305.1 68414.m00175 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           [Nicotiana rustica] GI:609175; contains Pfam profile
           PF00112: Papain family cysteine protease
          Length = 362

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 213 HSKATAYYELIEPSNVVTEVVENGPVSITAAV 308
           H   +AY     P +++ EV +NGPV +   V
Sbjct: 235 HYGVSAYKVRSHPDDIMAEVYKNGPVEVAFTV 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,317,805
Number of Sequences: 28952
Number of extensions: 160202
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)