Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0424
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   3.1  
SPBC21C3.16c |spt4||transcription elongation factor complex subu...    26   4.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 201 NIPVVSGNGEFAAVAEITSPPVN 269
           +IPV    G+   V E TSPP+N
Sbjct: 155 DIPVEVSGGDIEPVNEFTSPPLN 177


>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 509 RICVFCGMVMPQGHRHQKRAXSDGV 435
           R C+ CG+V+P      K   +DGV
Sbjct: 10  RACLICGIVLPHSVFANKGCPNDGV 34


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 186 SAGKVNIPVVSGNGEFAAVAEITSPPVNPESQR 284
           +A  +N   VS +G   A ++   PP  P SQR
Sbjct: 49  AASSLNSRPVSSSGSGNAYSQAPYPPARPTSQR 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,014
Number of Sequences: 5004
Number of extensions: 28175
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)