Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0424
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326...    31   0.79 
01_01_0731 - 5694273-5694584                                           29   1.8  
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366...    29   3.2  
08_02_0707 - 20212190-20214592                                         28   4.2  
01_06_1755 - 39673030-39673338                                         28   5.5  
04_01_0604 - 7943272-7943337,7943534-7943575,7943718-7943825,794...    27   7.3  
01_01_0283 + 2355183-2355245,2355455-2356045                           27   9.7  

>04_01_0248 +
           3254493-3254599,3258414-3258681,3260797-3261074,
           3261708-3261711,3263037-3263118,3263196-3263220,
           3263498-3263599,3264123-3264306,3264902-3265068,
           3265233-3265866
          Length = 616

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 29  PASTSVVKGQSTTLTVAFXPEGVTASSFRAVSADKTKATVSVXGMTITVNGVFC 190
           P  +S+V+G   ++       G  + S+R  ++  TK T ++  +T  +   FC
Sbjct: 288 PGGSSIVRGHGRSIAANLVASGALSRSYRVTNSIGTKGTCTMRIVTTLMMNSFC 341


>01_01_0731 - 5694273-5694584
          Length = 103

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 177 TAXSAGKVNIPVVSGNGEFAAVAEITSPPVNP 272
           ++ SA    +PV S  G+F AVA+   PP+ P
Sbjct: 63  SSPSAAAAAVPVSSTGGQFVAVAKTGRPPLPP 94


>03_05_0325 +
           23135816-23135894,23136161-23136333,23136440-23136613,
           23136881-23137004,23137090-23137190,23137337-23137423,
           23137801-23137896,23138209-23138329,23138475-23138603,
           23139458-23139549,23139660-23139771,23140189-23140541,
           23140670-23140899,23141179-23141278,23143357-23143411,
           23143548-23145496,23145587-23145745,23146514-23146685,
           23146758-23147056,23147246-23147521
          Length = 1626

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 521 FIHGRICVFCGMVMPQGHRHQKRAXSDGVFH 429
           +I+G IC  CG  +P G   +++  SD  FH
Sbjct: 575 WINGYICSICGFELPPGFEEERQEHSD--FH 603


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +1

Query: 7   GNRHDRDACQHLGGERAEHHADRGLXAGGR--NRXELSCGVCG*NKSHRVGXWYDHH 171
           G  H+   C+H G     HH D    +     +   L+   C  N SH  G  + HH
Sbjct: 532 GVNHNGACCEHHGDANKSHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHH 588


>01_06_1755 - 39673030-39673338
          Length = 102

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 4   SGNRHDRDACQHLGGERAEH--HADRGLXAGGRNRXELSC 117
           SG+RH  DA  HLGG R EH  H D      G  R   SC
Sbjct: 60  SGSRHG-DA--HLGGHREEHLVHGDEHRHGHGGGRQYDSC 96


>04_01_0604 -
           7943272-7943337,7943534-7943575,7943718-7943825,
           7943854-7944042
          Length = 134

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 44  VVKGQSTTLTVAFXPEGVTASSFRAV---SADKTKATVSVXG 160
           VV+G+ T  T+AF P  V    FR V   SAD++++T    G
Sbjct: 93  VVEGKETFSTIAFGPLKVDV-KFRGVGGRSADRSRSTTGAMG 133


>01_01_0283 + 2355183-2355245,2355455-2356045
          Length = 217

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 180 AXSAGKVNIPVVSGNGEFAAVAEITSPPVNPESQRC 287
           A + GK  I  V G+G+ AA  +  +   N E +RC
Sbjct: 110 ARATGKKYISQVEGDGDEAATTDAGNKRTNQECRRC 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,000
Number of Sequences: 37544
Number of extensions: 230130
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)