Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0424
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)                    31   0.61 
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)                      29   2.5  
SB_3092| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  

>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
          Length = 905

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -2

Query: 183 TPFTVMVIPXTDTVAFVLSADTARKLXAVTPSGXKATVSVVLCPFTTEVLAGVTV 19
           +P    V+    T A V+++ T     AVT +  KATV+  + P TT++ A  T+
Sbjct: 534 SPSATEVVESPSTEAIVITSLTE----AVTSTSSKATVTFTIIPSTTQIQASTTI 584


>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
          Length = 269

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 2   TAATGMTVTPASTSVVKGQSTTLTVAFXPEGVTASSFRAVSADKTKATVSVXGMTIT 172
           TAA   T T  +T+     ST    A     VTA++   V+A  T AT     +T T
Sbjct: 175 TAAATATATATATATATTTSTATVTATATVTVTATAATTVTATVTAATTVTVTVTAT 231



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 2   TAATGMTVTPASTSVVKGQSTTLTVAFXPEGVTASSFRAVSADKTKATVSVXGMTITV 175
           TA    T T  ST+ V   +T    A     VTA+   A +   T    +   +T+TV
Sbjct: 183 TATATATATTTSTATVTATATVTVTATAATTVTATVTAATTVTVTVTATAATTVTVTV 240


>SB_3092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 2   TAATGMTVTPASTSVVKGQSTTLTVAFXPEGVTASSFRAVSA--DKTKATVSVXGMTITV 175
           T      +TP ++ V +G  T L+ +F     T+++  AVSA  D  K    V  +    
Sbjct: 40  TLKVNQQITPVASPVCEGFDTALSDSFGLGSATSANVAAVSAAVDGIKGITKVATVAAKS 99

Query: 176 NGVF 187
            GVF
Sbjct: 100 FGVF 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,512
Number of Sequences: 59808
Number of extensions: 247698
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)