Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0424
         (544 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY865077-2|AAW79485.1|  629|Drosophila melanogaster SR-CI protein.     29   5.4  
AY071711-1|AAL49333.1|  225|Drosophila melanogaster RH24988p pro...    29   5.4  
AE014297-2574|AAF55589.1|  225|Drosophila melanogaster CG7714-PA...    29   5.4  

>AY865077-2|AAW79485.1|  629|Drosophila melanogaster SR-CI protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 20  TVTPASTSVVKGQSTTLTVAFXPEGVTASSFRAVSADKTKATVS 151
           TVT  STS  +  +TT T +      T +     +A  TKAT +
Sbjct: 399 TVTSTSTSTTRKSTTTTTTSTTTTSTTTTKRPTTTATTTKATTT 442


>AY071711-1|AAL49333.1|  225|Drosophila melanogaster RH24988p
           protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 2   TAATGMTVTPA-STSVVKGQSTTLTVAFXPEGVTASSFRAVSAD---KTKATVSV 154
           T A   T  P  ST+   G+STT+TV   P     S+  + S D    T  T+SV
Sbjct: 134 TTAASTTAAPGESTTAAPGESTTVTVPVPPTEAPGSTTASGSDDIITPTGTTISV 188


>AE014297-2574|AAF55589.1|  225|Drosophila melanogaster CG7714-PA
           protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 2   TAATGMTVTPA-STSVVKGQSTTLTVAFXPEGVTASSFRAVSAD---KTKATVSV 154
           T A   T  P  ST+   G+STT+TV   P     S+  + S D    T  T+SV
Sbjct: 134 TTAASTTAAPGESTTAAPGESTTVTVPVPPTEAPGSTTASGSDDIITPTGTTISV 188


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,411
Number of Sequences: 53049
Number of extensions: 377444
Number of successful extensions: 1066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)