Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0424
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    28   5.0  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    28   5.0  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        28   5.0  
Z92815-3|CAB07291.1|  307|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    27   6.6  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    27   6.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   6.6  

>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 335  KA*RSHRYVKMIRFSGTSLTLRINWR*GNFCNRSKLTITGYNRNVDLACRXRR 177
            KA R  RYV+ +R+  +++T++  WR G    R +  I    + V + C  R+
Sbjct: 890  KANRVRRYVEKLRYEKSAITIQAAWR-GYLARREQ--IANRKKVVMVQCAVRK 939


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 335  KA*RSHRYVKMIRFSGTSLTLRINWR*GNFCNRSKLTITGYNRNVDLACRXRR 177
            KA R  RYV+ +R+  +++T++  WR G    R +  I    + V + C  R+
Sbjct: 890  KANRVRRYVEKLRYEKSAITIQAAWR-GYLARREQ--IANRKKVVMVQCAVRK 939


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 335  KA*RSHRYVKMIRFSGTSLTLRINWR*GNFCNRSKLTITGYNRNVDLACRXRR 177
            KA R  RYV+ +R+  +++T++  WR G    R +  I    + V + C  R+
Sbjct: 890  KANRVRRYVEKLRYEKSAITIQAAWR-GYLARREQ--IANRKKVVMVQCAVRK 939


>Z92815-3|CAB07291.1|  307|Caenorhabditis elegans Hypothetical
           protein W01F3.2 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 11  TGMTVTP---ASTSVVKGQSTTLTVAFXPEGVTASSFRAVSADKTKATVSVXGMTITVNG 181
           TG  V P    ST+  + ++ T T      G+   S   +  D+T++TV V   T T+N 
Sbjct: 48  TGEIVIPFNDPSTTTTRRRTATTT------GIPVISVGGIGLDRTRSTVDVRSFTTTINP 101

Query: 182 VF 187
            F
Sbjct: 102 RF 103


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 8    ATGMTVTPASTSVVKGQSTTLTVA 79
            +TG+TVTP +T VV   +TTL  A
Sbjct: 1254 STGVTVTPPTTVVVPTTATTLNPA 1277


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 8    ATGMTVTPASTSVVKGQSTTLTVA 79
            +TG+TVTP +T VV   +TTL  A
Sbjct: 1254 STGVTVTPPTTVVVPTTATTLNPA 1277


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 8    ATGMTVTPASTSVVKGQSTTLTVA 79
            +TG+TVTP +T VV   +TTL  A
Sbjct: 1254 STGVTVTPPTTVVVPTTATTLNPA 1277


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 8    ATGMTVTPASTSVVKGQSTTLTVA 79
            +TG+TVTP +T VV   +TTL  A
Sbjct: 1254 STGVTVTPPTTVVVPTTATTLNPA 1277


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 14   GMTVTPASTSVVKGQSTTLTVAFXPEGVTASSFRAVSADKTKATVSVXGMTITVN 178
            G+T + A ++   G ST  +    P+G ++SS ++ ++ +   + S    T+TV+
Sbjct: 890  GLTSSSAQSTASTGVSTVASSTTIPQGSSSSSPQSPTSAQPAQSSSTSAATVTVS 944


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,559,867
Number of Sequences: 27780
Number of extensions: 175004
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)