Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0421
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   5.9  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   5.9  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.8  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 9   HTRIGLIYLNFLRIISRLLRQCV*RLDLYN 98
           H RI  I L F+R+ S++ R CV  +++Y+
Sbjct: 327 HARIKNIEL-FIRLYSQMYRHCVPIIEIYD 355


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 240 SAPSPQG*VAHHGADLLQHDEETXPGGSGRVNPV 341
           S PSPQG  A+  +  +     T P G G+   V
Sbjct: 267 SRPSPQGTTANSSSASISSLHNTTPDGEGKYRSV 300


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 268 LTMEQTCYNMMRKQXQEEVAASIQYLAMGA 357
           LTM Q C N+  KQ    + A  Q L+ G+
Sbjct: 349 LTMAQECMNIFEKQQLNLIGAIEQDLSTGS 378


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 33  LNFLRIISRLLRQCV*RLDLYN 98
           LN+L I +++LR C   +D+YN
Sbjct: 469 LNYLYIRAQILRDCDIIIDIYN 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,038
Number of Sequences: 5004
Number of extensions: 25250
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)