Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0421
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0427 + 17828007-17828570,17829788-17829904,17830319-178303...    32   0.21 
07_03_0574 - 19629875-19631032                                         32   0.21 
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    27   7.7  
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941...    27   7.7  

>10_08_0427 +
           17828007-17828570,17829788-17829904,17830319-17830384,
           17831466-17831572,17831939-17832017,17832861-17833574,
           17834040-17834148,17834263-17834429,17834876-17834950,
           17835025-17835117,17835202-17835294
          Length = 727

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 346 LSTGLTRPLPPGXVSSSCCSKSA 278
           +ST    PLP G VSSSCCS S+
Sbjct: 5   VSTAPRAPLPAGAVSSSCCSSSS 27


>07_03_0574 - 19629875-19631032
          Length = 385

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 355 PPWLSTGLTRPLPPGXVSSSCCSKSAPW*ATHPCGDG-ADVTLCS 224
           PP+   G+ RPLP   V++     +  W  T P  DG A V  CS
Sbjct: 164 PPYADDGIGRPLPGSRVTALAVVGAGIWTTTAPAEDGVASVRPCS 208


>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +1

Query: 286 CYNMMRKQXQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTGPXSIDYLLM 465
           C   + +Q   E  AS  Y ++ AYF  D V   GFA +      +        + Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 466 RG 471
           RG
Sbjct: 151 RG 152


>01_04_0068 +
           15693131-15693533,15693604-15693803,15693879-15694162,
           15694251-15694428
          Length = 354

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 355 PPWLSTGLTRPLPPGXVSSSCCSKSAPW*ATHPC 254
           PPW ++G++  +  G  ++S C+ S+   AT  C
Sbjct: 62  PPWATSGVSCTISSGSSATSSCTISSGSSATSSC 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,013,019
Number of Sequences: 37544
Number of extensions: 208332
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)