Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0421
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               31   0.49 
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   4.5  
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 280 QTCYNMMRKQXQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 402
           + C   + KQ   E+ AS  YL+M  +F  D V  PGF  Y
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKY 237


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 298 MRKQXQEEVAASIQYLAMGAYFSIDTVNRPGF 393
           + KQ  +E+ A   YL+M  +F  D +N PGF
Sbjct: 38  INKQINKELYAHYTYLSMAFHFDRDDINLPGF 69


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 280 QTCYNMMRKQXQEEVAASIQYLAMGAYFSIDTVNRPGF 393
           + C   + KQ   E+ AS  Y +M  YF  + V+ PGF
Sbjct: 10  EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGF 47


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +3

Query: 240  SAPSPQG*VAHHGADLLQHDEETXPG----GSGRVNPVLSHGGL 359
            S PS       H  DLL  + ET PG     S +V+P  +H GL
Sbjct: 4186 SVPSKSRNTKEHAKDLLTQEFETLPGTASTKSAQVHPSTTHNGL 4229


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 318 GSGRVNPV--LSHGGLLLDRYGEPPRLREXFFDAATEERE 431
           GSG+   +  L  GGL+ D+YG  PR  +  F A  E ++
Sbjct: 672 GSGKTYTIGGLDTGGLMDDQYGIIPRAVKQIFQAFEESKQ 711


>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1808

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 205 SNESEDSKENSPHLNXXYNHRFFDDT 128
           + ES   KEN PH +   N R +D+T
Sbjct: 413 AEESTSDKENVPHCSHGNNERCYDNT 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,148
Number of Sequences: 59808
Number of extensions: 210351
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)