Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0421
         (473 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   2.3  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    23   4.1  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    22   9.5  

>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 282 DLLQHDEETXPGGSGRVNPVLS 347
           D LQ +E   P G+GR+  V S
Sbjct: 98  DQLQQEETDAPAGAGRIRKVRS 119


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 465 HEQVVNGAWSRARVLQSQHRRIXREAGAVHRIDR-EVSP 352
           H QVV G        + QH+R  +     H +D+ EV P
Sbjct: 167 HRQVVIGTQQECLQPEQQHQRQQQHTVRRHNVDKVEVIP 205


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 346 LSTGLTRPLPPGXVSSSCCSKSAPW*ATHP 257
           L+TG   P P G  S S CSK +    T P
Sbjct: 761 LNTGGGGPPPDGSGSGSRCSKPSVTSTTPP 790


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,302
Number of Sequences: 2352
Number of extensions: 6667
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)